Eugène Poilane

AbstractPremiseThe ecological conditions that constrain plants to an environmental niche are assumed to be constant through time. While the fossil record has been used previously to test for niche conservatism of woody flowering plants, additional studies are needed in other plant groups especially since they can provide insight with paleoclimatic reconstructions, high biodiversity in modern terrestrial ecosystems, and significant contributions to agriculture.MethodsWe tested climatic niche conservatism across time by characterizing the climatic niches of living herbaceous ginger plants (Zingiberaceae) and woody dawn redwood (Metasequoia) against paleoniches reconstructed based on fossil distribution data and paleoclimatic models.ResultsDespite few fossil Zingiberaceae occurrences in the latitudinal tropics, unlike living Zingiberaceae, extinct Zingiberaceae likely experienced paratropical conditions in the higher latitudes, especially in the Cretaceous and Paleogene. The living and fossil distributions of Metasequoia largely remain in the upper latitudes of the northern hemisphere. The Zingiberaceae shifted from an initial subtropical climatic paleoniche in the Cretaceous, toward a temperate regime in the late Cenozoic; Metasequoia occupied a more consistent climatic niche over the same time intervals.ConclusionsBecause of the inconsistent climatic niches of Zingiberaceae over geologic time, we are less confident of using them for taxonomic‐based paleoclimatic reconstruction methods like nearest living relative, which assume a consistent climatic niche between extant and extinct relatives; we argue that the consistent climatic niche of Metasequoia is more appropriate for these reconstructions. Niche conservatism cannot be assumed between extant and extinct plants and should be tested further in groups used for paleoclimatic reconstructions.

Considering the global biodiversity crisis and the growing demand for medicinal plants, it is crucial to preserve therapeutically useful herbs. From a conservation management perspective under climate change, identifying areas that enable valuable natural resources to persist in the future is crucial. Machine learning-based models are commonly used to estimate the locations of climate refugia, which are critical for the effective species conservation. The aim of this study was to assess the impact of global warming on the epiphytic medicinal orchid— Bulbophyllum odoratissimum. Given how the long-term survival of plants inhabiting shrubs and trees depends on the availability of suitable phorophyets, in this research potential range changes in reported orchid plant hosts were evaluated. According to conducted analyses, global warming will cause a decline in the coverage of the suitable niches for B. odoratissimum and its main phorophyte. The most significant habitat loss in the case of the studied orchid and Pistacia weinmannifolia will be observed in the southern part of their geographical ranges and some new niches will simultaneously become available for these plants in the northern part. Climate change will significantly increase the overlap of geographical ranges of P. weinmannifolia and the orchid. In the SSP5-8.5 scenario trees will be available for more than 56% of the orchid population. Other analyzed phorophytes, will be available for B. odoratissimum to a very reduced extent, as orchids will only utilize these species as habitats only occasionally. This study provides data on the distribution of climatic refugia of B. odoratissimum under global warming. Moreover, this is the first evaluation of the future geographical ranges for its phorophytes. According to the conducted analyses, only one of the previously reported tree species which are inhabited by B. odoratissimum , P. weinmannifolia, can serve as a phorophyte for this orchid in the future. In this study, the areas designated as suitable for the occurrence of both orchids and their phorophytes should be considered priority conservation areas for the studied medicinal plants.

Traits associated with successful biological invasions across environmental gradients or geographical distances may vary depending on processes such as founder effects, ecological sorting, or adaptation to local conditions. Consequently, drivers of success are not necessarily consistent throughout the invasive range. We evaluate how plant traits, reproductive success and climatic preferences vary in populations of a naturalized orchid on islands in the Atlantic, Pacific and Indian oceans. Populations of Arundina graminifolia (bamboo orchid) were located on Puerto Rico, Hawaiian Islands (Hawai’i, O’ahu, Kaua’i), and Mauritius. Vegetative and reproductive traits were measured, and male and female success were assessed. Populations were compared using multivariate approaches. Species distribution modeling was used to assess potential climatic preferences within and among islands. Floral morphology differed among islands but considerable overlap in trait distributions exists. Reproductive success significantly differed among islands and was linked to floral traits, local pollinator pools and perhaps variable levels of florivory. Hawaiian populations occupied the broadest climatic niche space and Mauritius the most restricted. The effectiveness of using present points from the native range to reveal climatic suitability on invaded islands varied among islands. Successful invasions across a broad geographical range can occur even when morphology, reproductive success and climatic conditions are variable. As expected, some aspects of this global invasion are similar, but others differ among islands underscoring the context dependency of biological invasions and the difficulty of overall predictions. Los rasgos asociados a las invasiones biológicas exitosas a través de gradientes ambientales o distancias geográficas pueden variar dependiendo de procesos tales como el efecto fundador, el sorteo ecológico, o las adaptaciones a las condiciones locales. Consecuentemente, los impulsores del éxito no son necesariamente consistentes a través de la distribución invadida. Nosotros evaluamos cómo los rasgos, el éxito reproductivo y las preferencias climáticas varían en poblaciones de una orquídea naturalizada en islas de los océanos Atlántico, Pacífico e Índico. Las poblaciones de Arundina graminifolia (orquídea bambú) estaban localizadas en Puerto Rico, las Islas Hawaianas (Hawai’i, O’ahu, Kaua’i) y en la Isla de Mauricio. Los rasgos vegetativos y reproductivos fueron medidos, y el éxito reproductivo masculino y femenino fue evaluado. Comparamos las poblaciones usando enfoques estadísticos multivariados. También usamos modelos de distribución de especies para evaluar las preferencias climáticas tanto dentro de las islas, así como entre ellas. La morfología floral difirió entre islas, pero existe un sobrelapamiento considerable en la distribución de rasgos. El éxito reproductivo fue significativamente diferente entre islas, y estuvo ligado a los rasgos florales, el conjunto de polinizadores locales y, quizá, a niveles variables de florivoría. Las poblaciones hawaianas ocuparon el nicho climático más amplio mientras que las mauricianas ocuparon el más restringido. La efectividad de usar puntos de presencia de la distribución nativa para revelar la adecuación climática de las islas invadidas varió entre islas. Encontramos que las invasiones exitosas a través de una distribución geográfica amplia pueden ocurrir a pesar de la variabilidad en morfología, éxito reproductivo y condiciones climáticas. Como era de esperarse, algunos aspectos de esta invasión global son similares, pero otros difieren entre islas, haciendo hincapié en la dependencia del contexto de las invasiones biológicas y la dificultad de hacer predicciones generalizadas. Les traits associés aux invasions biologiques sur des gradients environnementaux ou des distances géographiques peuvent varier en fonction de processus tels que les effets fondateurs, le tri écologique ou l'adaptation aux conditions locales. Par conséquent, les facteurs de réussite ne sont pas nécessairement cohérents dans l'ensemble de l'aire de répartition de l'invasion. Nous évaluons comment les caractéristiques des plantes, le succès de la reproduction et les préférences climatiques varient dans les populations d'une orchidée naturalisée sur des îles des océans Atlantique, Pacifique et Indien. Les populations d'Arundina graminifolia (orchidée bambou) ont été localisées à Porto Rico, dans les îles hawaïennes (Hawai'i, O'ahu, Kaua'i) et à l'île Maurice. Les traits végétatifs et reproductifs ont été mesurés, et le succès reproductifs des mâles et des femelles a été évalué. Les populations ont été comparées à l'aide d'approches multivariées. La modélisation de la distribution des espèces a été utilisée pour évaluer les préférences climatiques potentielles au sein des îles et entre elles. La morphologie florale diffère d'une île à l'autre, mais il existe un chevauchement considérable dans la répartition des caractéristiques. Le succès de la reproduction diffère significativement entre les îles et est lié aux caractéristiques florales, aux réservoirs locaux de pollinisateurs et peut-être à des niveaux variables de florivorie. Les populations hawaïennes ont occupé la niche climatique la plus large et les populations mauriciennes la plus restreinte. L'efficacité de l'utilisation de points de présences dans l'aire de répartition indigène pour révéler l'adéquation climatique des îles envahies varie d'une île à l'autre. Des invasions réussies sur une vaste aire de répartition géographique peuvent se produire même lorsque la morphologie, le succès de la reproduction et les conditions climatiques sont variables. Comme prévu, certains aspects de cette invasion mondiale sont similaires, mais d'autres diffèrent d'une île à l'autre, ce qui souligne l’importance du contexte des invasions biologiques et la difficulté des prédictions globales.

Premise Cleomaceae is an important model clade for studies of evolutionary processes including genome evolution, floral form diversification, and photosynthetic pathway evolution. Diversification and divergence patterns in Cleomaceae remain tangled as research has been restricted by its worldwide distribution, limited genetic sampling and species coverage, and a lack of definitive fossil calibration points.MethodsWe used target sequence capture and the Angiosperms353 probe set to perform a phylogenetic study of Cleomaceae. We estimated divergence times and biogeographic analyses to explore the origin and diversification of the family. Seed morphology across extant taxa was documented with multifocal image‐stacking techniques and morphological characters were extracted, analyzed, and compared to fossil records.ResultsWe recovered a well‐supported and resolved phylogenetic tree of Cleomaceae generic relationships that includes 236 (~86%) species. We identified 11 principal clades and confidently placed Cleomella as sister to the rest of the family. Our analyses suggested that Cleomaceae and Brassicaceae diverged ~56 mya, and Cleomaceae began to diversify ~53 mya in the Palearctic and Africa. Multiple transatlantic disjunct distributions were identified. Seeds were imaged from 218 (~80%) species in the family and compared to all known fossil species.ConclusionsOur results represent the most comprehensive phylogenetic study of Cleomaceae to date. We identified transatlantic disjunctions and proposed explanations for these patterns, most likely either long‐distance dispersals or contractions in latitudinal distributions caused by climate change over geological timescales. We found that seed morphology varied considerably but mostly mirrored generic relationships.

Persicae Semen (Taoren), the seed of mature peaches consumed as both food and medicine, is native to the temperate regions of China, distributed in the provinces of North and East China, and currently cultivated worldwide. The primary components of Persicae Semen include volatile oil, protein, amino acids, amygdalin, and prunasin, all of which have pharmacological properties, such as anti-inflammatory, antioxidant, and immune regulatory effects, and are clinically used in the treatment of gynecological, cardiovascular, cerebrovascular, orthopedic, and digestive system diseases. This review provides a comprehensive perspective on the resource status, ethnopharmacology, phytochemistry, pharmacology, and toxicology, as well as the trend of Persicae Semen patent, global distribution, and clinical applications. This review will help facilitate the development and utilization of Persicae Semen in clinical settings.

Understanding belowground plant-microbial interactions is fundamental to predicting how plant species respond to climate change, particularly in global drylands. However, these interactions are poorly understood, especially for keystone grass species like the pan-palaeotropical Themeda triandra. Here, we used 16S rRNA amplicon sequencing to characterise microbiota in rhizospheres and bulk soils associated with T. triandra. We applied this method to eight native sites across a 3-fold aridity gradient (aridity index range = 0.318 to 0.903 = 87 % global aridity distribution) in southern Australia. By examining the relative contributions of climatic, edaphic, ecological, and host specific phenotypic traits, we identified the ecological drivers of core T. triandra-associated microbiota. We show that aridity had the strongest effect on shaping these core microbiotas, and report that a greater proportion of bacterial taxa that were from the core rhizosphere microbiomes were also differentially abundant in more arid T. triandra regions. These results suggest that T. triandra naturally growing in soils under more arid conditions have greater reliance on rhizosphere core taxa than plants growing under wetter conditions. Our study underscores the likely importance of targeted recruitment of bacteria into the rhizosphere by grassland keystone species, such as T. triandra, when growing in arid conditions. This bacterial soil recruitment is expected to become even more important under climate change.

Utricularia L. section Nigrescentes (Oliv.) Komiya (Lentibulariaceae), distributed in tropical Africa, Madagascar, Asia to Japan and Australia includes four species, U. bracteata R.D.Good, U. caerulea L., U. roseopurpurea Stapf ex Gamble and U. warburgii K.I.Goebel. Utricularia caerulea and U. roseopurpurea occur in India, and the latter species has long been treated as a synonym of the former. The identity of U. roseopurpurea has been confirmed using morphological, micromorphological, and molecular data and the species has been re-established. Multiple accessions of the species included in the phylogenetic study formed a sister clade to U. caerulea with strong branch support. The section Nigrescentes in India is revisited, and the distribution of both species is defined based on extensive field and herbarium surveys. The affinities between the two species are discussed. Full descriptions, notes on habitat requirements, nomenclature, assessment of the conservation status and photographs are provided for both species.

Pinus merkusii Jungh. Et de Vriese is a native pine species of Southeast Asia with primary distribution in Indonesia, especially in the mountainous areas of northern Sumatra. The P. merkusii has an important role in the forest ecosystem including maintaining ecosystem stability, reducing soil erosion, and providing habitat for various types of flora and fauna. Climate change is expected to affect the growth, development and distribution of plants, so this study aims to predicting the current dan future distribution of P. merkusii in Southeast Asia under climate change. We used Maxent and Geographic Information System (GIS), which incorporated bioclimatic, edaphic, and UVB radiation variables, to predict the suitable areas of P. merkusii under current and future climate scenarios (RCP 2.6, RCP 4.5, RCP 6.0, and RCP 8.5) and three time periods (2030, 2050, and 2080). Our findings indicate that compared to current, there will be an increase of suitable areas for P. merkusii in 2030 across all climate scenarios with RCPs 2.6, 4.5, 6.0, and 8.5 represent 9.53%, 9.66%, 9.73%, and 9.91% of Southeast Asia terrestrial area, respectively. In 2050, such increase will continue under all climate scenarios with RCP 4.5 has the largest proportion of suitable area (10.39%). However, in 2080, the suitable areas are likely to reduce compared with 2050 with RCPs 2.6, 4.5, 6.0, and 8.5 have a percentage of 9.21%, 9.69%, 10.29%, and 9.81%, respectively. Our predictions showed that there will be a geographical shift of suitable area of P. merkusii into higher elevation and latitude, migrating east and northeast. Our findings about the potential future distribution of P. merkusii might be used as a reference for cultivation according to predicted suitable areas in the future.

Aim Species occurrence data are valuable information that enables one to estimate geographical distributions, characterize niches and their evolution, and guide spatial conservation planning. Rapid increases in species occurrence data stem from increasing digitization and aggregation efforts, and citizen science initiatives. However, persistent quality issues in occurrence data can impact the accuracy of scientific findings, underscoring the importance of filtering erroneous occurrence records in biodiversity analyses.InnovationWe introduce an R package, occTest, that synthesizes a growing open‐source ecosystem of biodiversity cleaning workflows to prepare occurrence data for different modelling applications. It offers a structured set of algorithms to identify potential problems with species occurrence records by employing a hierarchical organization of multiple tests. The workflow has a hierarchical structure organized in testPhases (i.e. cleaning vs. testing) that encompass different testBlocks grouping different testTypes (e.g. environmental outlier detection), which may use different testMethods (e.g. Rosner test, jacknife,etc.). Four different testBlocks characterize potential problems in geographic, environmental, human influence and temporal dimensions. Filtering and plotting functions are incorporated to facilitate the interpretation of tests. We provide examples with different data sources, with default and user‐defined parameters. Compared to other available tools and workflows, occTest offers a comprehensive suite of integrated tests, and allows multiple methods associated with each test to explore consensus among data cleaning methods. It uniquely incorporates both coordinate accuracy analysis and environmental analysis of occurrence records. Furthermore, it provides a hierarchical structure to incorporate future tests yet to be developed.Main conclusionsoccTest will help users understand the quality and quantity of data available before the start of data analysis, while also enabling users to filter data using either predefined rules or custom‐built rules. As a result, occTest can better assess each record's appropriateness for its intended application.

The structure of lauraceous fossil woods from the middle Miocene deposits of the Dajie Formation of Ninger County, Yunnan Province, China has been studied. The occurrence of wide (> 7 seriate) rays in combination with the presence of scalariform perforation plates, the oil/mucilage cells in rays, axial parenchyma and among fibers as well as some other traits allow us to attribute the fossil woods to the extant genus Cryptocarya. We describe the woods as a new species C. latiradiata R. Zhang, T. Su & A. A. Oskolski sp. nov. (Lauraceae). This is an important improvement in the fossil record of Cryptocarya showing that this genus was widely ranged across southern China in the middle Miocene. The occurrence of the fossil woods of such termophyllous genus as Cryptocarya in the Dajie Formation suggests that this middle Miocene climate in southern Yunnan was frostless. This result is consistent with other evidence for the warm environment caused by complex topographic structures in this region since the middle Miocene linked to the successive uplift of the Tibetan Plateau and the Ailao Mountains. Particularly, it suggests that the Ailao Mountains in the middle Miocene were high enough to weaken the influence of the Asian Winter Monsoon on the territory of Yunnan.