标本数据启用的科学

Botero‐Cañola, S., C. Torhorst, N. Canino, L. Beati, K. C. O’Hara, A. M. James, and S. M. Wisely. 2024. Integrating Systematic Surveys With Historical Data to Model the Distribution of Ornithodoros turicata americanus, a Vector of Epidemiological Concern in North America. Ecology and Evolution 14. https://doi.org/10.1002/ece3.70547

Globally, vector‐borne diseases are increasing in distribution and frequency, affecting humans, domestic animals, and wildlife. Science‐based management and prevention of these diseases requires a sound understanding of the distribution and environmental requirements of the vectors and hosts involved in disease transmission. Integrated Species Distribution Models (ISDM) account for diverse data types through hierarchical modeling and represent a significant advancement in species distribution modeling. We assessed the distribution of the soft tick subspecies Ornithodoros turicata americanus. This tick species is a potential vector of African swine fever virus (ASFV), a pathogen responsible for an ongoing global epizootic that threatens agroindustry worldwide. Given the novelty of this method, we compared the results to a conventional Maxent SDM and validated the results through data partitioning. Our input for the model consisted of systematically collected detection data from 591 sampled field sites and 12 historical species records, as well as four variables describing climatic and soil characteristics. We found that a combination of climatic variables describing seasonality and temperature extremes, along with the amount of sand in the soil, determined the predicted intensity of occurrence of this tick species. When projected in geographic space, this distribution model predicted 62% of Florida as suitable habitat for this tick species. The ISDM presented a higher TSS and AUC than the Maxent conventional model, while sensitivity was similar between both models. Our case example shows the utility of ISDMs in disease ecology studies and highlights the broad range of geographic suitability for this important disease vector. These results provide important foundational information to inform future risk assessment work for tick‐borne relapsing fever surveillance and potential ASF introduction and maintenance in the United States.

Graham, K. K., P. Glaum, J. Hartert, J. Gibbs, E. Tucker, R. Isaacs, and F. S. Valdovinos. 2024. A century of wild bee sampling: historical data and neural network analysis reveal ecological traits associated with species loss. Proceedings of the Royal Society B: Biological Sciences 291. https://doi.org/10.1098/rspb.2023.2837

We analysed the wild bee community sampled from 1921 to 2018 at a nature preserve in southern Michigan, USA, to study long-term community shifts in a protected area. During an intensive survey in 1972 and 1973, Francis C. Evans detected 135 bee species. In the most recent intensive surveys conducted in 2017 and 2018, we recorded 90 species. Only 58 species were recorded in both sampling periods, indicating a significant shift in the bee community. We found that the bee community diversity, species richness and evenness were all lower in recent samples. Additionally, 64% of the more common species exhibited a more than 30% decline in relative abundance. Neural network analysis of species traits revealed that extirpation from the reserve was most likely for oligolectic ground-nesting bees and kleptoparasitic bees, whereas polylectic cavity-nesting bees were more likely to persist. Having longer phenological ranges also increased the chance of persistence in polylectic species. Further analysis suggests a climate response as bees in the contemporary sampling period had a more southerly overall distribution compared to the historic community. Results exhibit the utility of both long-term data and machine learning in disentangling complex indicators of bee population trajectories.

Tang, T., Y. Zhu, Y.-Y. Zhang, J.-J. Chen, J.-B. Tian, Q. Xu, B.-G. Jiang, et al. 2024. The global distribution and the risk prediction of relapsing fever group Borrelia: a data review with modelling analysis. The Lancet Microbe. https://doi.org/10.1016/s2666-5247(23)00396-8

Background The recent discovery of emerging relapsing fever group Borrelia (RFGB) species, such as Borrelia miyamotoi, poses a growing threat to public health. However, the global distribution and associated risk burden of these species remain uncertain. We aimed to map the diversity, distribution, and potential infection risk of RFGB.MethodsWe searched PubMed, Web of Science, GenBank, CNKI, and eLibrary from Jan 1, 1874, to Dec 31, 2022, for published articles without language restriction to extract distribution data for RFGB detection in vectors, animals, and humans, and clinical information about human patients. Only articles documenting RFGB infection events were included in this study, and data for RFGB detection in vectors, animals, or humans were composed into a dataset. We used three machine learning algorithms (boosted regression trees, random forest, and least absolute shrinkage and selection operator logistic regression) to assess the environmental, ecoclimatic, biological, and socioeconomic factors associated with the occurrence of four major RFGB species: Borrelia miyamotoi, Borrelia lonestari, Borrelia crocidurae, and Borrelia hermsii; and mapped their worldwide risk level.FindingsWe retrieved 13 959 unique studies, among which 697 met the selection criteria and were used for data extraction. 29 RFGB species have been recorded worldwide, of which 27 have been identified from 63 tick species, 12 from 61 wild animals, and ten from domestic animals. 16 RFGB species caused human infection, with a cumulative count of 26 583 cases reported from Jan 1, 1874, to Dec 31, 2022. Borrelia recurrentis (17 084 cases) and Borrelia persica (2045 cases) accounted for the highest proportion of human infection. B miyamotoi showed the widest distribution among all RFGB, with a predicted environmentally suitable area of 6·92 million km2, followed by B lonestari (1·69 million km2), B crocidurae (1·67 million km2), and B hermsii (1·48 million km2). The habitat suitability index of vector ticks and climatic factors, such as the annual mean temperature, have the most significant effect among all predictive models for the geographical distribution of the four major RFGB species.InterpretationThe predicted high-risk regions are considerably larger than in previous reports. Identification, surveillance, and diagnosis of RFGB infections should be prioritised in high-risk areas, especially within low-income regions.FundingNational Key Research and Development Program of China.

Li, D., Z. Li, Z. Liu, Y. Yang, A. G. Khoso, L. Wang, and D. Liu. 2022. Climate change simulations revealed potentially drastic shifts in insect community structure and crop yields in China’s farmland. Journal of Pest Science. https://doi.org/10.1007/s10340-022-01479-3

Climate change will cause drastic fluctuations in agricultural ecosystems, which in turn may affect global food security. We used ecological niche modeling to predict the potential distribution for four cereal aphids (i.e., Sitobion avenae, Rhopalosiphum padi, Schizaphis graminum, and Diurphis noxia…